Mix Dry Ingredients: In a medium bowl, whisk together the spelt flour and cocoa powder until there are no streaks of cocoa left. This helps the cocoa disperse evenly and prevents dry pockets in your batter.
Mix Wet Ingredients: In a separate large mixing bowl, use a hand mixer to combine the melted coconut oil and coconut sugar (or white sugar) until smooth. Add the room-temperature eggs and whisk again until well incorporated.
Tip: If your eggs are cold, place them in a bowl of warm water for 5–10 minutes before cracking them. This prevents the coconut oil from solidifying.
Add Yogurt: While whisking constantly, add in the yogurt gradually. This helps prevent the cold yogurt from causing the coconut oil to clump.
Add Starter: Mix in your potato flake starter (active or discard) until fully blended into the wet ingredients.
Combine Wet and Dry: Add the flour-cocoa mixture to the wet mixture. Mix until just combined—over-mixing can make the muffins dense.
Ferment the Batter: Cover the bowl with a clean kitchen towel or plastic wrap and let it sit at room temperature for 8 hours to ferment. This step can add flavor and improve texture. If you need to bake right away, skip the fermentation and move on to the next step.
Prepare Oven & Pans: Preheat the oven to 400°F. Line a muffin pan with parchment baking cups, paper liners, or lightly grease each cup with oil or butter to prevent sticking.
Add Leavening: Sift the salt, baking soda, and baking powder directly over the batter to break up any clumps. Use the hand mixer on low speed to mix them in evenly.
Grate Zucchini: Finely grate the zucchini using a box grater or food processor. There’s no need to peel it—the skin adds color and nutrients. Do not drain the zucchini; the extra moisture helps keep the muffins soft.
Add Zucchini & Chocolate Chips: Mix the grated zucchini into the batter until evenly distributed. Gently fold in ¾ cup of the chocolate chips, reserving the remaining ¼ cup for topping.
Fill Muffin Cups: Use a ¼-cup scoop to portion the batter evenly into the prepared muffin pan. If desired, sprinkle a few extra chocolate chips on top of each muffin.
Bake in Two Stages: Place the pan in the oven and bake for 5–6 minutes at 400°F—this initial high heat helps create tall, domed tops. Without opening the oven door, reduce the temperature to 350°F and continue baking for another 13–15 minutes.
Check Doneness: Insert a cake tester or thin knife into the center of a muffin. If it comes out clean or with just a few moist crumbs (but no wet batter), they’re done.
Remove muffins from the pan and place them on a wire cooling rack. Let them cool completely before storing to prevent condensation and sogginess.